Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5704

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14072 and 14073 are separated by 634 nucleotides mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728,026 to 730,424 14072 mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731,059 to 731,970 14073

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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727,144 - +0.1
727,162 + +0.2
727,230 + +1.7
727,259 - +2.3
727,275 - +0.0
727,289 - +0.1
727,295 + -0.0
727,317 - -1.5
727,318 + +0.4
727,319 + +0.2
727,338 + -0.4
727,348 - -1.0
727,349 + -0.1
727,359 + -0.3
727,468 - +0.6
727,473 + +0.2
727,483 - +0.5
727,504 + -2.7
727,518 - -1.1
727,530 + +1.1
727,538 + -0.1
727,608 - -1.5
727,696 - +0.1
727,697 - -0.0
727,728 + -0.7
727,736 + +0.6
727,745 + -1.0
727,749 + +0.1
727,866 - +0.9
727,875 + +0.3
727,891 + -0.5
727,892 - +0.2
727,903 - +0.4
728,037 - +1.0
728,041 + +0.8
728,349 + 14072 mRNA_5704 0.13 -0.5
729,218 + 14072 mRNA_5704 0.50 -0.5
729,515 + 14072 mRNA_5704 0.62 -1.0
729,699 - 14072 mRNA_5704 0.70 +0.0
729,785 - 14072 mRNA_5704 0.73 +0.7
729,802 + 14072 mRNA_5704 0.74 -1.2
729,822 - 14072 mRNA_5704 0.75 -1.6
730,270 - +0.7
730,321 - +0.2
730,477 - -0.9
730,570 - -0.3
730,666 - +0.5
730,720 + -0.1
730,732 + +1.2
730,750 + +0.0
730,890 + +0.0
730,902 + +0.6
730,911 - -0.0
731,155 - 14073 mRNA_5705 0.11 +0.5
731,181 - 14073 mRNA_5705 0.13 -0.6
731,212 + 14073 mRNA_5705 0.17 -2.2

Or see this region's nucleotide sequence