Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5763

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14130 and 14131 are separated by 154 nucleotides14131 and 14132 are separated by 174 nucleotides mRNA_5762: 14130 - SUPERFAMILY--SSF47095, at 884,263 to 884,826 14130 mRNA_5763: 14131 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF51004, at 884,981 to 886,323 14131 mRNA_5764: 14132 - K07404 pgl 6-phosphogluconolactonase, at 886,498 to 887,807 14132

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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884,054 - -1.3
884,252 + -1.2
884,298 - -0.6
884,333 + 14130 mRNA_5762 0.12 -1.1
884,496 - 14130 mRNA_5762 0.41 +0.3
884,655 + 14130 mRNA_5762 0.70 +0.1
884,769 - 14130 mRNA_5762 0.90 +0.0
884,782 - +1.2
884,795 - -0.7
884,795 - +0.5
884,801 + +1.1
885,080 - -1.0
885,252 + 14131 mRNA_5763 0.20 +0.5
885,501 - 14131 mRNA_5763 0.39 -1.3
885,506 + 14131 mRNA_5763 0.39 -0.9
885,522 - 14131 mRNA_5763 0.40 -0.7
885,528 + 14131 mRNA_5763 0.41 +0.9
885,834 + 14131 mRNA_5763 0.64 +0.3
886,106 + 14131 mRNA_5763 0.84 +0.1
886,107 + 14131 mRNA_5763 0.84 +0.1
886,151 + 14131 mRNA_5763 0.87 -0.3
886,227 - -0.2
886,229 - -2.0
886,243 - -0.1
886,257 + +0.9
886,301 - -0.1
886,374 + -0.7
886,377 + -2.1
886,395 - +0.6
886,401 + -0.1
886,406 + +0.6
886,501 + +0.7
886,641 - 14132 mRNA_5764 0.11 +0.2
886,677 - 14132 mRNA_5764 0.14 -1.7
886,763 + 14132 mRNA_5764 0.20 -0.3
886,884 + 14132 mRNA_5764 0.29 -1.2
887,180 - 14132 mRNA_5764 0.52 +0.2
887,265 + 14132 mRNA_5764 0.59 -1.4
887,292 + 14132 mRNA_5764 0.61 +1.1

Or see this region's nucleotide sequence