Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5769

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14137 and 14138 are separated by 476 nucleotides mRNA_5769: 14137 - Hypothetical Protein, at 902,157 to 903,800 14137 mRNA_5770: 14138 - K15171 SUPT4H1, SPT4 transcription elongation factor SPT4, at 904,277 to 904,949 14138

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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901,353 + +1.4
901,417 + +0.6
901,456 + +1.1
902,028 - +0.6
902,188 - +1.2
902,188 - +0.1
902,361 - 14137 mRNA_5769 0.12 +0.7
902,495 + 14137 mRNA_5769 0.21 +1.8
902,615 + 14137 mRNA_5769 0.28 -0.2
902,644 + 14137 mRNA_5769 0.30 -0.4
903,077 - 14137 mRNA_5769 0.56 +1.3
903,200 - 14137 mRNA_5769 0.63 -1.0
903,234 + 14137 mRNA_5769 0.66 +1.1
903,783 - -2.8
903,802 - +1.1
903,927 + +0.3
903,949 + -0.5
903,983 + +0.7
904,098 + +0.6
904,100 - -0.2
904,209 - +0.7
904,233 + +2.6
904,253 + -0.4
904,257 - +0.7

Or see this region's nucleotide sequence