Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5801

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14168 and 14169 are separated by 265 nucleotides14169 and 14170 are separated by 156 nucleotides mRNA_5800: 14168 - K11801 WDR23 WD repeat-containing protein 23, at 970,023 to 972,593 14168 mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972,859 to 974,663 14169 mRNA_5802: 14170 - K07441 ALG14 beta-1,4-N-acetylglucosaminyltransferase, at 974,820 to 975,968 14170

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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972,037 - 14168 mRNA_5800 0.78 -0.5
972,198 + 14168 mRNA_5800 0.85 -2.9
972,210 + 14168 mRNA_5800 0.85 +0.7
972,305 - 14168 mRNA_5800 0.89 -0.9
972,321 - 14168 mRNA_5800 0.89 +0.1
972,357 + -0.2
972,483 - -0.1
972,490 + +0.9
972,512 + +1.0
972,563 - +0.5
972,625 + +1.0
972,630 + -0.1
972,638 + +0.2
972,648 - +1.9
972,652 + -0.4
972,778 - +0.0
972,798 - +0.7
972,799 + -1.2
972,810 + -2.8
972,929 - -2.1
972,932 - +1.5
973,101 - 14169 mRNA_5801 0.13 +0.3
973,104 + 14169 mRNA_5801 0.14 -0.3
973,123 + 14169 mRNA_5801 0.15 -0.2
973,222 - 14169 mRNA_5801 0.20 +0.8
973,224 - 14169 mRNA_5801 0.20 +0.3
973,232 + 14169 mRNA_5801 0.21 -0.0
973,243 + 14169 mRNA_5801 0.21 +0.5
973,402 + 14169 mRNA_5801 0.30 +0.2
973,501 + 14169 mRNA_5801 0.36 -0.6
973,659 - 14169 mRNA_5801 0.44 +0.8
973,821 - 14169 mRNA_5801 0.53 -0.3
973,951 + 14169 mRNA_5801 0.60 -1.4
974,411 - 14169 mRNA_5801 0.86 +0.5
974,834 - +1.8

Or see this region's nucleotide sequence