Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5858

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14225 and 14226 are separated by 652 nucleotides14226 and 14227 are separated by 424 nucleotides mRNA_5857: 14225 - K01875 SARS, serS seryl-tRNA synthetase, at 1,099,938 to 1,101,615 14225 mRNA_5858: 14226 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 1,102,268 to 1,103,746 14226 mRNA_5859: 14227 - BLAST probable atp-binding cassette transporter [Ceraceosor..., at 1,104,171 to 1,104,734 14227

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,101,615 + -0.5
1,101,618 - +0.4
1,101,619 + +0.0
1,101,620 + +0.2
1,101,621 - -0.3
1,101,623 - +0.2
1,101,625 + +1.2
1,101,626 - -0.8
1,101,627 - -0.1
1,101,630 + +0.1
1,101,638 + +1.4
1,101,639 - -0.2
1,101,649 + -0.4
1,101,650 - -0.2
1,101,651 - -0.4
1,101,658 + -0.2
1,101,663 + +0.5
1,101,672 + +0.0
1,101,674 + -1.8
1,101,680 + -1.4
1,101,725 - +0.1
1,101,728 + -0.7
1,101,729 + -0.3
1,101,744 - +0.7
1,101,753 - -0.0
1,101,763 - +0.6
1,101,763 - +0.5
1,101,764 - +0.5
1,101,765 - +1.3
1,101,769 + -1.3
1,101,769 + -0.0
1,101,769 + -1.3
1,101,777 + -0.1
1,101,782 + -0.9
1,101,783 - +1.2
1,101,784 - +0.8
1,101,789 - +0.2
1,101,792 + -0.3
1,101,792 + +0.7
1,101,792 + +0.3
1,101,796 - -0.4
1,101,802 + -0.9
1,101,802 + +0.0
1,101,806 - +0.2
1,101,806 - +0.2
1,101,808 + -0.8
1,101,809 + -1.2
1,101,814 - -0.7
1,101,814 - +0.9
1,101,817 + +0.2
1,101,827 + +0.3
1,101,834 - -0.4
1,101,854 + -0.0
1,101,927 - -0.5
1,101,938 + +1.1
1,101,940 + +1.0
1,101,951 + +0.0
1,101,973 + +1.0
1,101,991 - +0.0
1,101,995 - -0.2
1,102,039 - -0.2
1,102,072 - -0.4
1,102,089 + +0.8
1,102,091 + +0.1
1,102,097 + -1.6
1,102,097 - +0.7
1,102,097 - -0.7
1,102,104 - +1.1
1,102,115 - -0.4
1,102,116 + +0.8
1,102,124 + -1.1
1,102,127 + -1.2
1,102,130 - -0.6
1,102,134 - -0.7
1,102,137 - -1.2
1,102,138 - -1.4
1,102,139 + +1.4
1,102,139 + -0.6
1,102,158 - +0.7
1,102,160 - -1.9
1,102,161 + +0.1
1,102,163 + -0.3
1,102,164 - -1.7
1,102,168 - -0.9
1,102,169 + +0.2
1,102,179 - +0.2
1,102,194 + -0.1
1,102,196 + +0.1
1,102,198 - -0.3
1,102,276 - +1.4
1,102,307 - +0.1
1,102,431 - 14226 mRNA_5858 0.11 -0.2
1,102,466 - 14226 mRNA_5858 0.13 -0.7
1,102,473 - 14226 mRNA_5858 0.14 -1.1
1,102,495 + 14226 mRNA_5858 0.15 -0.0
1,102,549 - 14226 mRNA_5858 0.19 -1.0
1,102,577 - 14226 mRNA_5858 0.21 +0.7
1,102,599 - 14226 mRNA_5858 0.22 -0.9
1,102,605 - 14226 mRNA_5858 0.23 +0.0
1,102,606 + 14226 mRNA_5858 0.23 -0.3
1,102,632 + 14226 mRNA_5858 0.25 +0.8
1,102,742 - 14226 mRNA_5858 0.32 -0.3
1,102,743 - 14226 mRNA_5858 0.32 -0.4
1,102,771 + 14226 mRNA_5858 0.34 -0.5
1,102,772 + 14226 mRNA_5858 0.34 +0.3
1,102,811 + 14226 mRNA_5858 0.37 +2.6
1,102,874 - 14226 mRNA_5858 0.41 -0.6
1,103,048 + 14226 mRNA_5858 0.53 +0.1
1,103,097 + 14226 mRNA_5858 0.56 -1.5
1,103,128 + 14226 mRNA_5858 0.58 +0.2
1,103,159 - 14226 mRNA_5858 0.60 +0.4
1,103,294 - 14226 mRNA_5858 0.69 +0.3
1,103,297 - 14226 mRNA_5858 0.70 +0.1
1,103,323 + 14226 mRNA_5858 0.71 +0.6
1,103,374 + 14226 mRNA_5858 0.75 -1.9
1,103,622 + -1.0
1,103,641 - -0.7
1,103,713 - -1.3
1,103,719 - +1.0
1,103,728 + -0.0
1,103,763 + +0.2
1,103,796 + -0.1
1,103,807 - +0.6
1,103,861 - +0.2
1,103,875 - -0.5
1,103,882 + +0.3
1,103,891 + -0.8
1,103,891 + +0.7
1,103,918 + -1.0
1,103,926 + +1.6
1,103,930 + -0.3
1,103,931 + -1.1
1,104,003 - +0.0

Or see this region's nucleotide sequence