Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5863

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14230 and 14231 are separated by 210 nucleotides14231 and 14232 are separated by 210 nucleotides mRNA_5862: 14230 - K14998 SURF1, SHY1 surfeit locus 1 family protein, at 1,110,574 to 1,111,803 14230 mRNA_5863: 14231 - K09281 K09281 copper-fist transcription factor, at 1,112,014 to 1,113,676 14231 mRNA_5864: 14232 - K01322 PREP prolyl oligopeptidase, at 1,113,887 to 1,116,821 14232

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,111,090 + 14230 mRNA_5862 0.42 -1.3
1,111,360 + 14230 mRNA_5862 0.64 +1.7
1,111,634 - 14230 mRNA_5862 0.86 -0.6
1,112,077 + +0.1
1,112,234 + 14231 mRNA_5863 0.13 -1.3
1,112,545 + 14231 mRNA_5863 0.32 +0.2
1,112,823 + 14231 mRNA_5863 0.49 -0.4
1,113,674 + +0.3
1,113,690 + +1.3
1,113,838 - +0.3
1,113,857 + -1.6
1,113,968 - -1.0
1,113,977 + +0.9
1,114,138 - +1.5
1,114,146 - -0.2
1,114,158 - -1.7
1,114,163 + -3.3
1,114,168 - +1.0
1,114,185 - 14232 mRNA_5864 0.10 -0.3
1,114,276 - 14232 mRNA_5864 0.13 -1.2
1,114,308 - 14232 mRNA_5864 0.14 +0.4
1,114,366 - 14232 mRNA_5864 0.16 +0.1
1,114,642 + 14232 mRNA_5864 0.26 -0.0

Or see this region's nucleotide sequence