Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5976

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14343 and 14344 are separated by 340 nucleotides14344 and 14345 are separated by 392 nucleotides mRNA_5975: 14343 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,361,032 to 1,363,169 14343 mRNA_5976: 14344 - SUPERFAMILY--SSF52047, at 1,363,510 to 1,364,859 14344 mRNA_5977: 14345 - HMMPfam-F-box-like-PF12937, at 1,365,252 to 1,367,121 14345

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,362,638 + 14343 mRNA_5975 0.75 +0.4
1,362,984 + +1.2
1,363,116 - +0.4
1,363,134 + +0.6
1,363,269 - +0.6
1,363,286 + -2.5
1,363,299 + +0.3
1,363,300 + +0.0
1,363,419 - +0.4
1,363,442 - -0.2
1,363,537 + +0.3
1,363,742 + 14344 mRNA_5976 0.17 +0.1
1,363,979 - 14344 mRNA_5976 0.35 +0.6
1,364,147 - 14344 mRNA_5976 0.47 +0.3
1,364,579 + 14344 mRNA_5976 0.79 -0.5
1,364,697 - 14344 mRNA_5976 0.88 +1.1
1,364,897 - -0.2
1,365,020 + +0.4
1,365,700 + 14345 mRNA_5977 0.24 +0.8

Or see this region's nucleotide sequence