Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6085

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14452 and 14453 are separated by 677 nucleotides14453 and 14454 are separated by 687 nucleotides mRNA_6084: 14452 - SUPERFAMILY--SSF54427, at 1,610,344 to 1,611,077 14452 mRNA_6085: 14453 - HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230, at 1,611,755 to 1,615,148 14453 mRNA_6086: 14454 - HMMPfam-Cutinase-PF01083,SUPERFAMILY--SSF53474, at 1,615,836 to 1,616,999 14454

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,611,124 + -1.9
1,611,560 + -1.2
1,611,567 - +0.1
1,611,568 + -0.2
1,611,568 + +1.9
1,611,597 + -2.4
1,611,599 + -0.7
1,611,608 + -0.1
1,611,621 - +1.4
1,611,685 + -0.3
1,611,685 - +0.1
1,611,688 + -1.0
1,611,689 + +1.0
1,611,690 - +1.8
1,611,695 - -0.3
1,611,697 - +0.2
1,611,851 + -1.4
1,611,855 - -0.3
1,611,858 + -0.1
1,611,860 - +0.5
1,611,862 - -0.7
1,611,988 + -0.1
1,611,995 + -0.7
1,615,157 - +0.3
1,615,176 - -0.6
1,615,183 + +0.1
1,615,295 - -0.2
1,615,328 + +0.5
1,615,336 - +0.0
1,615,345 - +1.4
1,615,421 + -1.2
1,615,473 - +0.3
1,615,480 + +0.1
1,615,512 + +0.5
1,615,518 + -0.4
1,615,544 - -0.1
1,615,544 - +0.2
1,615,544 - +1.1
1,615,546 - -0.9
1,615,549 - -1.4
1,615,579 + +0.2
1,615,633 - +0.7
1,615,633 - -0.4
1,615,633 - -0.7
1,615,634 - -2.1
1,615,634 - -0.0
1,615,647 - -0.8
1,615,649 - +1.7
1,615,650 + +0.9
1,615,653 + -0.3
1,615,653 - -1.1
1,615,656 - +1.3
1,615,677 + -0.2
1,615,722 + -0.9
1,615,767 + +2.4
1,615,794 - +1.9
1,615,811 + +0.5
1,615,814 - +0.6
1,615,815 + -0.1
1,615,827 - +0.6
1,615,945 - -0.4
1,615,959 + 14454 mRNA_6086 0.11 +1.1
1,616,046 + 14454 mRNA_6086 0.18 -0.1
1,616,088 + 14454 mRNA_6086 0.22 -0.8
1,616,090 + 14454 mRNA_6086 0.22 +2.0

Or see this region's nucleotide sequence