Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6184

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14551 and 14552 are separated by 821 nucleotides14552 and 14553 are separated by 208 nucleotides mRNA_6183: 14551 - Hypothetical Protein, at 200,560 to 201,520 14551 mRNA_6184: 14552 - Hypothetical Protein, at 202,342 to 203,677 14552 mRNA_6185: 14553 - SUPERFAMILY--SSF69118, at 203,886 to 204,987 14553

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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201,345 + 14551 mRNA_6183 0.82 -1.6
201,366 - 14551 mRNA_6183 0.84 +0.7
201,399 + 14551 mRNA_6183 0.87 -1.2
201,422 + 14551 mRNA_6183 0.90 +0.9
201,431 + -2.0
201,448 - -1.4
201,457 - +1.6
201,468 - -1.8
201,469 - +0.9
201,471 - +0.3
201,473 - -1.5
201,479 - -0.3
201,482 + -1.0
201,492 + -1.6
201,493 - -1.9
201,493 + -0.1
201,635 - -1.5
201,648 + +1.6
201,649 - +0.1
201,663 - -0.1
201,682 - -0.1
201,804 + +0.4
201,931 + -1.8
201,961 - -1.4
202,094 + +0.2
202,103 + +0.5
202,531 - 14552 mRNA_6184 0.14 -1.6
202,626 - 14552 mRNA_6184 0.21 -0.4
202,704 + 14552 mRNA_6184 0.27 +0.1
203,055 + 14552 mRNA_6184 0.53 -0.7
203,540 - 14552 mRNA_6184 0.90 +0.1
203,549 - -0.5
203,567 - -0.7
203,706 + -1.3
203,814 - -0.2
203,852 - +0.4
203,855 - -0.4
203,875 + +0.7
203,888 + +2.6
203,983 - +1.2
203,984 + -0.1
203,986 - -0.0
204,003 + 14553 mRNA_6185 0.11 -0.7
204,005 + 14553 mRNA_6185 0.11 -3.1
204,018 + 14553 mRNA_6185 0.12 +0.1
204,057 + 14553 mRNA_6185 0.16 -4.9
204,317 + 14553 mRNA_6185 0.39 -0.3
204,441 + 14553 mRNA_6185 0.50 -0.0

Or see this region's nucleotide sequence