Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6227

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14594 and 14595 are separated by 966 nucleotides mRNA_6226: 14594 - Hypothetical Protein, at 297,535 to 298,697 14594 mRNA_6227: 14595 - BLAST DEAD box helicase [Trichophyton violaceum], at 299,664 to 299,897 14595

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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298,664 + +0.4
298,755 + +1.3
298,756 - -0.1
298,757 + +1.0
298,764 + +1.7
298,953 + -0.3
299,024 + +0.4
299,095 - +0.5
299,099 - +0.3
299,105 + -0.4
299,105 - +0.9
299,106 + +0.7
299,147 - +1.3
299,151 + +0.0
299,159 - -1.2
299,160 + +1.2
299,205 + -0.2
299,207 - -0.9
299,230 + +1.3
299,787 + 14595 mRNA_6227 0.53 +0.1
299,907 + -0.7
299,919 - +0.8
299,921 + -0.8
299,931 + +2.5
299,935 - +0.3
299,938 + -0.2
299,946 + +1.2
299,971 - +0.3
299,976 - -0.8
299,977 + +2.6
299,984 + +4.0
300,013 - -0.4
300,014 - -1.0
300,022 - -0.9
300,030 + +0.8
300,287 + +0.1
300,306 + -2.5
300,851 - -1.5

Or see this region's nucleotide sequence