Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6243

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14610 and 14611 are separated by 385 nucleotides14611 and 14612 are separated by 692 nucleotides mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335,352 to 337,546 14610 mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072 14611 mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340,765 to 342,148 14612

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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337,073 + 14610 mRNA_6242 0.78 +1.6
337,340 + +0.5
337,646 + +1.7
337,784 - -0.6
338,228 + 14611 mRNA_6243 0.14 -0.6
338,399 + 14611 mRNA_6243 0.22 +0.5
338,816 + 14611 mRNA_6243 0.41 -0.4
339,126 + 14611 mRNA_6243 0.56 -0.4
339,238 - 14611 mRNA_6243 0.61 +0.2
339,246 - 14611 mRNA_6243 0.61 +1.2
339,247 - 14611 mRNA_6243 0.61 +0.9
339,682 + 14611 mRNA_6243 0.82 -0.0
339,708 + 14611 mRNA_6243 0.83 +0.8
339,846 + 14611 mRNA_6243 0.89 +1.9
339,858 + 14611 mRNA_6243 0.90 -0.2
339,861 - -0.9
339,992 + -1.8
339,998 + -0.8
340,150 + +0.1
340,297 - +0.5
340,298 + -0.1
340,307 + -1.3
340,308 - +0.2
340,421 - +0.5
340,453 - -1.5
340,557 - -1.8
340,566 - -1.2
340,573 + -0.2
340,584 + -0.6
340,588 + +1.1
340,588 - -0.3
340,691 + +1.4
340,693 - +1.5
340,741 - +0.1

Or see this region's nucleotide sequence