Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6250

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14617 and 14618 are separated by 658 nucleotides14618 and 14619 are separated by 395 nucleotides mRNA_6249: 14617 - K01052 LIPA lysosomal acid lipase/cholesteryl ester hydrolase, at 351,854 to 354,817 14617 mRNA_6250: 14618 - Hypothetical Protein, at 355,476 to 357,206 14618 mRNA_6251: 14619 - KOG4188 Uncharacterized conserved protein, at 357,602 to 358,776 14619

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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355,104 + +0.8
355,138 - +0.2
355,138 + +0.2
355,261 - -1.3
355,267 - +0.4
355,275 + +0.0
355,279 + +0.4
355,290 - -0.3
355,291 - -0.7
355,291 - -1.0
355,412 + +0.8
355,414 - +1.6
355,567 + +0.4
356,748 - 14618 mRNA_6250 0.73 -0.7
357,041 + +1.1
357,080 - +0.2
357,206 + -0.0
357,206 + +0.9
357,775 + 14619 mRNA_6251 0.15 +0.1
357,915 + 14619 mRNA_6251 0.27 +0.6

Or see this region's nucleotide sequence