Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6290

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14657 and 14658 are separated by 339 nucleotides14658 and 14659 are separated by 348 nucleotides mRNA_6289: 14657 - Hypothetical Protein, at 449,519 to 450,929 14657 mRNA_6290: 14658 - KOG0394 Ras-related GTPase, at 451,269 to 452,760 14658 mRNA_6291: 14659 - K12182 HGS, HRS, VPS27 hepatocyte growth factor-regulated tyrosine kinase substrate, at 453,109 to 455,308 14659

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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450,349 + 14657 mRNA_6289 0.59 -0.7
450,876 + -0.3
450,915 - -0.3
450,943 + +0.5
451,096 - +1.2
451,237 - -0.4
451,373 + +1.5
451,383 - -0.5
451,807 + 14658 mRNA_6290 0.36 -0.9
452,084 + 14658 mRNA_6290 0.55 +1.2
452,250 - 14658 mRNA_6290 0.66 +0.5
452,523 + 14658 mRNA_6290 0.84 -0.1
452,578 - 14658 mRNA_6290 0.88 +0.3
452,690 - +1.3
452,716 + +1.7
452,841 - -0.0
452,842 - -1.4
452,861 + -0.3
453,036 + -1.1
453,178 - -1.0
453,191 - -3.3
453,217 + -1.5
453,466 + 14659 mRNA_6291 0.16 -0.4
453,608 + 14659 mRNA_6291 0.23 -4.1

Or see this region's nucleotide sequence