Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6314

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14681 and 14682 are separated by 378 nucleotides14682 and 14683 are separated by 549 nucleotides mRNA_6313: 14681 - K10592 HUWE1, MULE, ARF-BP1 E3 ubiquitin-protein ligase HUWE1, at 512,417 to 524,941 14681 mRNA_6314: 14682 - K11426 SMYD SET and MYND domain-containing protein, at 525,320 to 527,665 14682 mRNA_6315: 14683 - K10609 CUL4 cullin 4, at 528,215 to 531,333 14683

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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525,074 - -1.0
525,399 - +0.2
525,820 - 14682 mRNA_6314 0.21 -1.6
526,139 - 14682 mRNA_6314 0.35 -1.7
526,314 - 14682 mRNA_6314 0.42 +0.4
526,458 + 14682 mRNA_6314 0.49 -1.5
526,571 - 14682 mRNA_6314 0.53 -1.4
526,584 - 14682 mRNA_6314 0.54 +0.5
526,602 - 14682 mRNA_6314 0.55 +0.3
526,740 - 14682 mRNA_6314 0.61 +0.0
527,356 - 14682 mRNA_6314 0.87 +1.1
527,625 + +1.7
527,897 + -0.0
527,902 + -0.4
527,902 - -0.5
527,930 + +1.4
527,943 - -1.1
528,014 + -3.3
528,048 - -0.8
528,227 + +0.2

Or see this region's nucleotide sequence