Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6509

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14876 and 14877 are separated by 159 nucleotides14877 and 14878 are separated by 195 nucleotides mRNA_6508: 14876 - KOG2688 Transcription-associated recombination protein - Thp1p, at 948,399 to 950,118 14876 mRNA_6509: 14877 - K12494 PSD PH and SEC7 domain-containing protein, at 950,278 to 955,327 14877 mRNA_6510: 14878 - K00818 E2.6.1.11, argD acetylornithine aminotransferase, at 955,523 to 957,319 14878

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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950,359 - +0.3
950,475 + +0.0
950,498 - +1.5
950,936 - 14877 mRNA_6509 0.13 +0.5
950,936 + 14877 mRNA_6509 0.13 +0.2
950,940 - 14877 mRNA_6509 0.13 -1.4
951,166 - 14877 mRNA_6509 0.18 +0.1
951,813 + 14877 mRNA_6509 0.30 -0.8
951,968 + 14877 mRNA_6509 0.33 +0.5
952,241 - 14877 mRNA_6509 0.39 +0.1
953,108 - 14877 mRNA_6509 0.56 +0.2
953,551 - 14877 mRNA_6509 0.65 -2.2
953,675 + 14877 mRNA_6509 0.67 -1.3
954,170 - 14877 mRNA_6509 0.77 +0.0
954,213 + 14877 mRNA_6509 0.78 -1.2
954,521 + 14877 mRNA_6509 0.84 +0.4
954,607 - 14877 mRNA_6509 0.86 -1.1
954,885 + +0.4
955,203 + -1.5
955,323 - -1.1
955,325 + +0.0
955,358 - +0.4
955,636 - -1.0
955,637 + -0.7
955,680 - +0.0
955,973 + 14878 mRNA_6510 0.25 +0.6
955,987 - 14878 mRNA_6510 0.26 -0.5

Or see this region's nucleotide sequence