Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6553

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14921 and 14922 are separated by 966 nucleotides mRNA_6553: 14921 - SUPERFAMILY--SSF52266, at 1,077,741 to 1,079,727 14921 mRNA_6554: 14922 - K15258 PARP6_8 poly [ADP-ribose] polymerase 6/8, at 1,080,694 to 1,084,243 14922

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,077,303 - +0.8
1,077,331 + +0.2
1,077,439 - +0.4
1,077,603 - -0.0
1,077,988 + 14921 mRNA_6553 0.12 -0.3
1,079,065 + 14921 mRNA_6553 0.67 -0.4
1,079,334 + 14921 mRNA_6553 0.80 +0.3
1,079,367 + 14921 mRNA_6553 0.82 -1.7
1,079,473 - 14921 mRNA_6553 0.87 -3.0
1,079,616 - +0.1
1,079,631 + -0.8
1,079,783 - +0.7
1,079,790 - -1.9
1,079,791 + +0.4
1,079,803 - +0.5
1,079,822 - +0.8
1,079,837 + +0.7
1,079,942 - +0.4
1,079,943 - -2.3
1,079,954 - -0.1
1,079,954 - -0.3
1,079,957 + +0.5
1,079,963 - -0.1
1,079,967 + -2.7
1,079,967 + -0.7
1,079,970 + -0.2
1,079,975 - +1.2
1,079,977 - +0.5
1,079,979 + +0.4
1,080,147 + +1.2
1,080,151 + -0.3
1,080,159 + +0.3
1,080,424 + +0.9
1,080,584 + -0.2

Or see this region's nucleotide sequence