Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6556

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14923 and 14924 are separated by 64 nucleotides14924 and 14925 are separated by 250 nucleotides mRNA_6555: 14923 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,085,124 to 1,086,396 14923 mRNA_6556: 14924 - K14793 RRP9 ribosomal RNA-processing protein 9, at 1,086,461 to 1,088,538 14924 mRNA_6557: 14925 - K13566 NIT2 omega-amidase, at 1,088,789 to 1,090,275 14925

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,085,667 - 14923 mRNA_6555 0.43 -0.4
1,085,789 + 14923 mRNA_6555 0.52 -0.1
1,086,212 - 14923 mRNA_6555 0.85 -0.3
1,086,214 + 14923 mRNA_6555 0.86 -0.6
1,086,224 + 14923 mRNA_6555 0.86 -0.6
1,086,230 - 14923 mRNA_6555 0.87 -0.2
1,086,248 - 14923 mRNA_6555 0.88 +1.0
1,086,378 - +0.4
1,088,605 + -1.3
1,088,611 - -2.3
1,088,871 - -1.0
1,088,893 - +0.0
1,088,893 + -0.9
1,088,895 + -1.1
1,088,896 - -0.1
1,088,922 + -1.2
1,088,922 + -0.3
1,088,923 - -0.1
1,089,034 - 14925 mRNA_6557 0.16 -0.0
1,089,188 - 14925 mRNA_6557 0.27 -0.2
1,089,473 + 14925 mRNA_6557 0.46 -0.7

Or see this region's nucleotide sequence