Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6559

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14926 and 14927 are separated by 44 nucleotides mRNA_6558: 14926 - HMMPfam-Bacterial signalling protein N terminal repeat-PF03707, at 1,090,620 to 1,093,721 14926 mRNA_6559: 14927 - Hypothetical Protein, at 1,093,766 to 1,094,365 14927

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,093,449 + -0.2
1,093,712 + -0.4
1,093,733 - -0.0
1,093,876 + 14927 mRNA_6559 0.18 -0.0
1,093,893 - 14927 mRNA_6559 0.21 +0.1
1,094,007 + 14927 mRNA_6559 0.40 +0.4
1,094,008 - 14927 mRNA_6559 0.40 +0.4
1,094,009 + 14927 mRNA_6559 0.41 +0.4
1,094,031 + 14927 mRNA_6559 0.44 +0.1
1,094,038 - 14927 mRNA_6559 0.45 +0.7
1,094,039 + 14927 mRNA_6559 0.46 -0.0
1,094,041 + 14927 mRNA_6559 0.46 +1.6
1,094,042 - 14927 mRNA_6559 0.46 -0.2
1,094,043 - 14927 mRNA_6559 0.46 +0.6
1,094,047 + 14927 mRNA_6559 0.47 -1.3
1,094,048 - 14927 mRNA_6559 0.47 -0.8
1,094,052 - 14927 mRNA_6559 0.48 +0.5
1,094,052 + 14927 mRNA_6559 0.48 +1.2
1,094,052 - 14927 mRNA_6559 0.48 +0.7
1,094,058 + 14927 mRNA_6559 0.49 +0.4
1,094,062 - 14927 mRNA_6559 0.49 -2.5
1,094,071 + 14927 mRNA_6559 0.51 +0.1
1,094,073 + 14927 mRNA_6559 0.51 +0.0
1,094,082 + 14927 mRNA_6559 0.53 +0.5
1,094,094 - 14927 mRNA_6559 0.55 +0.7
1,094,094 + 14927 mRNA_6559 0.55 -0.4
1,094,100 + 14927 mRNA_6559 0.56 -0.1
1,094,128 - 14927 mRNA_6559 0.60 -1.1
1,094,144 + 14927 mRNA_6559 0.63 -0.4
1,094,175 - 14927 mRNA_6559 0.68 +0.0
1,094,192 + 14927 mRNA_6559 0.71 -2.9
1,094,192 + 14927 mRNA_6559 0.71 +0.9
1,094,197 - 14927 mRNA_6559 0.72 -0.7
1,094,197 - 14927 mRNA_6559 0.72 -0.1
1,094,218 - 14927 mRNA_6559 0.75 -0.3
1,094,224 - 14927 mRNA_6559 0.76 +0.5
1,094,226 - 14927 mRNA_6559 0.77 +0.6
1,094,267 + 14927 mRNA_6559 0.83 +1.5
1,094,327 - -2.2
1,094,334 - +0.8
1,094,344 + -1.6
1,094,346 - +0.9
1,094,346 - +0.2
1,094,346 + +0.2
1,094,354 - +1.2
1,094,359 - -0.5
1,094,371 - -0.3
1,094,380 - -0.1
1,094,383 - +1.1
1,094,389 + +0.5
1,094,393 - -1.8
1,094,395 + -1.3
1,094,412 + -1.3
1,094,422 + -1.1
1,094,463 + -0.4
1,094,494 + -0.9
1,094,497 - -0.1
1,094,518 - +0.1
1,094,532 - -0.7
1,094,533 + +1.2
1,094,561 + -0.2
1,094,569 + +1.4
1,094,572 - -0.3
1,094,601 + -0.6
1,094,628 - +0.6
1,094,634 + -0.8
1,094,641 + +1.3
1,094,655 - +0.5
1,094,733 - +2.0
1,094,776 - +0.1
1,094,788 - +0.5
1,094,804 + -1.2
1,094,805 + +0.2
1,094,812 + -1.0
1,094,851 + +0.2
1,094,935 + +0.2
1,095,046 + -0.7
1,095,046 + -2.0
1,095,232 + +0.4

Or see this region's nucleotide sequence