Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6574

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14941 and 14942 are separated by 320 nucleotides14942 and 14943 are separated by 483 nucleotides mRNA_6573: 14941 - K20472 COPZ, RET3 coatomer subunit zeta, at 1,136,818 to 1,137,633 14941 mRNA_6574: 14942 - K18258 CRYM thiomorpholine-carboxylate dehydrogenase, at 1,137,954 to 1,139,326 14942 mRNA_6575: 14943 - KOG0440 Cell cycle-associated protein Mob1-1, at 1,139,810 to 1,140,979 14943

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,138,083 - +0.5
1,138,083 + +0.6
1,138,114 - 14942 mRNA_6574 0.12 -0.1
1,138,251 - 14942 mRNA_6574 0.22 -0.5
1,138,262 + 14942 mRNA_6574 0.22 -0.3
1,138,409 - 14942 mRNA_6574 0.33 +0.0
1,138,528 - 14942 mRNA_6574 0.42 -0.9
1,138,678 + 14942 mRNA_6574 0.53 -0.8
1,138,929 - 14942 mRNA_6574 0.71 +0.3
1,138,977 + 14942 mRNA_6574 0.75 -1.0
1,139,105 - 14942 mRNA_6574 0.84 -2.5
1,139,112 - 14942 mRNA_6574 0.84 -0.2
1,139,112 - 14942 mRNA_6574 0.84 +0.4
1,139,117 + 14942 mRNA_6574 0.85 -0.1
1,139,134 + 14942 mRNA_6574 0.86 +0.2
1,139,263 - +1.1
1,139,419 + -0.1
1,139,427 + -0.3
1,139,538 - -0.4
1,139,541 - -0.3
1,139,560 + -0.4
1,139,562 - -0.5
1,139,564 - -0.5
1,139,576 - -1.5
1,139,579 + -0.5
1,139,584 - +0.1
1,139,708 - +1.3
1,139,857 + +1.3
1,139,876 + +0.8

Or see this region's nucleotide sequence