Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6585

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14953 and 14954 are separated by 219 nucleotides mRNA_6585: 14953 - K14850 RRP8 ribosomal RNA-processing protein 8, at 1,161,418 to 1,162,965 14953 mRNA_6586: 14954 - SUPERFAMILY--SSF55729, at 1,163,185 to 1,164,579 14954

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,160,464 + +0.6
1,160,475 - +0.9
1,160,510 + -0.4
1,160,591 + +0.4
1,160,598 - +1.6
1,160,632 + +1.2
1,160,754 - +1.0
1,160,763 + +1.7
1,160,772 + +1.4
1,160,784 - +0.9
1,160,801 + -0.2
1,160,802 + +0.3
1,160,915 - +0.8
1,160,915 - -1.8
1,161,064 + -1.7
1,161,072 - +0.1
1,161,080 + +0.2
1,161,098 + -1.9
1,161,217 - -1.3
1,161,229 + +0.7
1,161,239 + +0.8
1,161,240 - +0.3
1,161,242 - -1.3
1,161,262 - +0.1
1,161,399 - +0.2
1,161,429 + -2.9
1,161,662 + 14953 mRNA_6585 0.16 +0.6
1,161,662 + 14953 mRNA_6585 0.16 -1.3
1,162,234 - 14953 mRNA_6585 0.53 -0.9
1,162,420 + 14953 mRNA_6585 0.65 -0.5
1,162,667 - 14953 mRNA_6585 0.81 -1.9
1,162,674 - 14953 mRNA_6585 0.81 -0.5
1,162,828 + -1.3
1,162,878 + -0.1
1,162,960 + -0.4
1,162,994 + -0.3
1,162,999 - +1.8
1,163,065 - +0.1
1,163,074 - -0.3
1,163,085 - +0.7
1,163,090 - -0.3
1,163,091 + +0.1
1,163,093 - +0.5
1,163,109 + +0.8
1,163,113 - -0.3
1,163,116 + +0.2
1,163,116 - -0.0
1,163,117 + -0.7
1,163,119 - +0.9
1,163,396 - 14954 mRNA_6586 0.15 -0.0
1,163,404 + 14954 mRNA_6586 0.16 -0.4
1,163,412 + 14954 mRNA_6586 0.16 -0.1
1,163,416 - 14954 mRNA_6586 0.17 +1.0
1,163,533 + 14954 mRNA_6586 0.25 -0.7
1,163,855 + 14954 mRNA_6586 0.48 +0.0

Or see this region's nucleotide sequence