Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6598

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14965 and 14966 are separated by 171 nucleotides14966 and 14967 are separated by 63 nucleotides mRNA_6597: 14965 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 1,190,168 to 1,192,738 14965 mRNA_6598: 14966 - K11518 TOM40 mitochondrial import receptor subunit TOM40, at 1,192,910 to 1,194,373 14966 mRNA_6599: 14967 - Hypothetical Protein, at 1,194,437 to 1,195,925 14967

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,192,001 - 14965 mRNA_6597 0.71 -3.5
1,192,122 + 14965 mRNA_6597 0.76 +1.0
1,192,149 - 14965 mRNA_6597 0.77 -1.0
1,192,279 - 14965 mRNA_6597 0.82 +0.1
1,192,292 + 14965 mRNA_6597 0.83 -0.1
1,192,293 - 14965 mRNA_6597 0.83 +0.1
1,192,566 + +0.0
1,192,879 - -0.9
1,192,880 + -2.0
1,194,519 + +0.3
1,194,788 - 14967 mRNA_6599 0.24 +0.6
1,194,800 + 14967 mRNA_6599 0.24 -2.1
1,194,815 + 14967 mRNA_6599 0.25 -0.1
1,195,124 + 14967 mRNA_6599 0.46 +0.3
1,195,215 + 14967 mRNA_6599 0.52 -0.0

Or see this region's nucleotide sequence