Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6605

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14972 and 14973 are separated by 357 nucleotides14973 and 14974 are separated by 91 nucleotides mRNA_6604: 14972 - K12812 UAP56, BAT1, SUB2 ATP-dependent RNA helicase UAP56/SUB2, at 1,210,510 to 1,213,080 14972 mRNA_6605: 14973 - KOG2177 Predicted E3 ubiquitin ligase, at 1,213,438 to 1,216,130 14973 mRNA_6606: 14974 - KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer, at 1,216,222 to 1,217,950 14974

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,213,231 - -0.2
1,213,248 - +0.5
1,213,386 + -2.2
1,213,537 - +0.3
1,213,687 - +0.5
1,213,837 + 14973 mRNA_6605 0.15 -0.7
1,213,989 - 14973 mRNA_6605 0.20 -0.2
1,214,102 + 14973 mRNA_6605 0.25 -1.0
1,214,116 + 14973 mRNA_6605 0.25 +0.2
1,214,118 + 14973 mRNA_6605 0.25 -0.2
1,214,474 - 14973 mRNA_6605 0.38 -1.5
1,214,503 - 14973 mRNA_6605 0.40 +0.2
1,214,515 - 14973 mRNA_6605 0.40 -1.4
1,214,560 + 14973 mRNA_6605 0.42 +0.7
1,215,194 + 14973 mRNA_6605 0.65 -0.2
1,215,592 + 14973 mRNA_6605 0.80 +0.0
1,216,168 + -1.1
1,216,783 + 14974 mRNA_6606 0.32 -0.2
1,216,794 + 14974 mRNA_6606 0.33 -0.6
1,216,805 - 14974 mRNA_6606 0.34 +0.8
1,216,825 - 14974 mRNA_6606 0.35 +0.4
1,216,880 - 14974 mRNA_6606 0.38 +1.9
1,217,099 - 14974 mRNA_6606 0.51 +0.4

Or see this region's nucleotide sequence