Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6614

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14981 and 14982 are separated by 474 nucleotides14982 and 14983 are separated by 89 nucleotides mRNA_6613: 14981 - K08740 MSH4 DNA mismatch repair protein MSH4, at 1,245,585 to 1,249,013 14981 mRNA_6614: 14982 - HMMPfam-MRC1-like domain-PF09444, at 1,249,488 to 1,254,442 14982 mRNA_6615: 14983 - Hypothetical Protein, at 1,254,532 to 1,256,049 14983

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,248,544 + 14981 mRNA_6613 0.86 +2.9
1,248,657 - 14981 mRNA_6613 0.90 +0.1
1,249,002 + -0.9
1,249,244 - -0.3
1,249,250 + -1.3
1,249,251 - +1.1
1,249,287 - -1.3
1,249,291 - +0.7
1,249,461 + -1.0
1,253,048 + 14982 mRNA_6614 0.72 +0.5
1,254,438 - -1.3
1,254,534 + +0.4
1,254,834 - 14983 mRNA_6615 0.20 -0.6
1,254,948 - 14983 mRNA_6615 0.27 -0.6
1,254,965 - 14983 mRNA_6615 0.29 +1.6
1,254,971 + 14983 mRNA_6615 0.29 -1.5
1,255,219 - 14983 mRNA_6615 0.45 +1.6
1,255,435 - 14983 mRNA_6615 0.59 +0.6

Or see this region's nucleotide sequence