Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6617

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14984 and 14985 are separated by 239 nucleotides mRNA_6616: 14984 - Hypothetical Protein, at 1,256,370 to 1,257,792 14984 mRNA_6617: 14985 - K15544 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72, at 1,258,032 to 1,259,206 14985

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,257,230 - 14984 mRNA_6616 0.60 -0.0
1,257,514 + 14984 mRNA_6616 0.80 +0.3
1,257,524 + 14984 mRNA_6616 0.81 -0.6
1,257,806 + -0.5
1,257,958 - -1.1
1,257,974 + +0.0
1,257,977 + -1.0
1,258,114 + -1.7
1,258,213 - 14985 mRNA_6617 0.15 +0.1
1,258,640 - 14985 mRNA_6617 0.52 -1.1
1,258,820 + 14985 mRNA_6617 0.67 +1.8
1,258,946 - 14985 mRNA_6617 0.78 -1.2
1,259,409 - +0.8
1,259,589 - +0.9
1,259,851 - +0.3
1,259,877 + +0.3
1,259,909 + +0.4
1,259,973 + +1.1
1,259,999 - -1.6
1,260,107 - +0.5
1,260,130 - +0.0
1,260,150 + +0.5
1,260,150 - -1.9

Or see this region's nucleotide sequence