Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6721

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15088 and 15089 are separated by 123 nucleotides15089 and 15090 are separated by 339 nucleotides mRNA_6720: 15088 - K11293 HIRA, HIR1 protein HIRA/HIR1, at 1,531,665 to 1,535,330 15088 mRNA_6721: 15089 - K14554 UTP21, WDR36 U3 small nucleolar RNA-associated protein 21, at 1,535,454 to 1,538,954 15089 mRNA_6722: 15090 - K17908 WIPI, ATG18 autophagy-related protein 18, at 1,539,294 to 1,541,156 15090

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,534,767 + 15088 mRNA_6720 0.85 -1.1
1,534,791 + 15088 mRNA_6720 0.85 -1.2
1,535,017 + -1.4
1,535,196 - -0.9
1,535,288 + -2.6
1,535,339 - -0.0
1,535,359 + -0.1
1,535,410 + +1.5
1,539,005 - -2.2
1,539,036 + +0.2
1,539,037 - -1.2
1,539,056 - +0.2
1,539,123 + +0.5
1,539,373 - +0.0
1,539,461 - -1.9
1,539,611 + 15090 mRNA_6722 0.17 -0.2
1,539,769 - 15090 mRNA_6722 0.25 -2.2
1,539,906 - 15090 mRNA_6722 0.33 -1.0

Or see this region's nucleotide sequence