Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6793

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15160 and 15161 are separated by 107 nucleotides15161 and 15162 are separated by 316 nucleotides mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143,720 to 144,685 15160 mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144,793 to 148,155 15161 mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148,472 to 150,085 15162

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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143,850 - 15160 mRNA_6792 0.13 +1.0
143,906 + 15160 mRNA_6792 0.19 -0.9
144,023 + 15160 mRNA_6792 0.31 -0.9
144,186 + 15160 mRNA_6792 0.48 +0.4
144,602 - -1.1
144,614 + -0.7
144,638 + +0.2
144,742 + -0.0
144,752 + +0.1
144,755 - +0.4
144,760 + +0.5
144,762 - -0.6
144,765 + -0.1
144,775 - +1.6
144,778 + +0.3
144,783 - -0.1
144,923 + -0.6
144,924 - -0.6
144,937 + -0.9
144,939 - -1.3
145,016 + -0.1
145,190 + 15161 mRNA_6793 0.12 -0.6
145,219 + 15161 mRNA_6793 0.13 -2.5
145,247 + 15161 mRNA_6793 0.13 -1.0
145,282 + 15161 mRNA_6793 0.15 +0.5
145,362 - 15161 mRNA_6793 0.17 -0.4
145,363 + 15161 mRNA_6793 0.17 +0.2
145,758 + 15161 mRNA_6793 0.29 -0.4
145,798 + 15161 mRNA_6793 0.30 -0.5
145,800 + 15161 mRNA_6793 0.30 -0.9
146,099 + 15161 mRNA_6793 0.39 +0.2
146,116 + 15161 mRNA_6793 0.39 -0.7
146,264 + 15161 mRNA_6793 0.44 -0.1
146,391 - 15161 mRNA_6793 0.48 +0.7
146,494 - 15161 mRNA_6793 0.51 +0.6
146,514 + 15161 mRNA_6793 0.51 +1.0
146,793 - 15161 mRNA_6793 0.59 +0.9
146,799 + 15161 mRNA_6793 0.60 -1.0
146,927 - 15161 mRNA_6793 0.63 +0.2
147,086 - 15161 mRNA_6793 0.68 -1.4
147,518 - 15161 mRNA_6793 0.81 -0.6
147,817 + 15161 mRNA_6793 0.90 -0.6
148,254 - -0.2
148,270 + +1.2
148,370 - -1.0
148,401 - -1.5
148,421 - +0.4
148,545 - +0.3
148,546 + +0.3
148,698 - 15162 mRNA_6794 0.14 -0.9
148,700 - 15162 mRNA_6794 0.14 +0.8
149,032 + 15162 mRNA_6794 0.35 -0.9

Or see this region's nucleotide sequence