Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6835

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15202 and 15203 are separated by 468 nucleotides mRNA_6834: 15202 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 233,665 to 235,762 15202 mRNA_6835: 15203 - Hypothetical Protein, at 236,231 to 236,767 15203

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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235,482 - 15202 mRNA_6834 0.87 +1.4
235,496 - 15202 mRNA_6834 0.87 -1.2
235,612 - +0.6
235,793 - +0.5
236,026 + -0.2
236,086 + -3.0
236,202 + -0.8
236,224 - +0.5
236,267 + -1.4
236,397 - 15203 mRNA_6835 0.31 +1.1
236,526 - 15203 mRNA_6835 0.55 -0.8
236,604 + 15203 mRNA_6835 0.69 +0.8
236,621 + 15203 mRNA_6835 0.73 -0.2
236,621 + 15203 mRNA_6835 0.73 -1.5
236,629 + 15203 mRNA_6835 0.74 +1.4
236,636 + 15203 mRNA_6835 0.75 +1.6
236,687 - 15203 mRNA_6835 0.85 -0.2
236,694 + 15203 mRNA_6835 0.86 +0.7
236,710 - 15203 mRNA_6835 0.89 +1.1
236,789 - -0.1
236,811 - -0.6
236,813 + +2.2
236,817 - -0.1
236,818 + +1.1
236,823 - -2.2
236,824 - -0.3
236,825 - +0.4
236,829 - -1.1
236,831 + +1.3
236,836 - +0.6
236,836 - -0.2
236,836 - -1.6
236,840 + +2.7
236,840 + +0.4
236,858 - -0.8
236,991 + +0.1
237,010 + -1.0
237,025 - -2.3
237,027 - -0.8
237,055 - -1.0
237,064 - +0.1
237,109 + -1.3
237,145 - -0.1
237,145 - +0.1
237,154 + -0.5
237,159 + -0.3
237,262 + -0.3
237,266 + -0.4
237,274 + -0.3
237,274 + +0.7
237,278 + +0.5
237,292 + -0.9
237,299 - +1.0
237,325 - -0.4
237,333 - +1.2
237,361 + -0.8
237,366 + -0.3
237,377 + -0.6
237,378 + -1.2
237,378 + +0.1
237,384 + -1.2
237,415 - +0.2
237,428 + -0.9
237,475 + -0.4
237,519 - -1.1
237,519 - +0.8
237,521 - -1.2
237,526 + -0.4
237,531 + -0.5
237,533 - +0.1
237,533 - +0.6
237,541 + +1.1
237,541 + +0.2
237,541 + +0.5
237,541 + -0.2
237,545 - -0.0
237,557 - -3.9
237,563 + +0.7
237,571 - +0.3
237,571 - -0.5

Or see this region's nucleotide sequence