Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6836

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15204 and 15205 are separated by 496 nucleotides mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237,797 to 238,899 15204 mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239,396 to 240,785 15205

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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236,811 - -0.6
236,813 + +2.2
236,817 - -0.1
236,818 + +1.1
236,823 - -2.2
236,824 - -0.3
236,825 - +0.4
236,829 - -1.1
236,831 + +1.3
236,836 - +0.6
236,836 - -0.2
236,836 - -1.6
236,840 + +2.7
236,840 + +0.4
236,858 - -0.8
236,991 + +0.1
237,010 + -1.0
237,025 - -2.3
237,027 - -0.8
237,055 - -1.0
237,064 - +0.1
237,109 + -1.3
237,145 - -0.1
237,145 - +0.1
237,154 + -0.5
237,159 + -0.3
237,262 + -0.3
237,266 + -0.4
237,274 + -0.3
237,274 + +0.7
237,278 + +0.5
237,292 + -0.9
237,299 - +1.0
237,325 - -0.4
237,333 - +1.2
237,361 + -0.8
237,366 + -0.3
237,377 + -0.6
237,378 + -1.2
237,378 + +0.1
237,384 + -1.2
237,415 - +0.2
237,428 + -0.9
237,475 + -0.4
237,519 - -1.1
237,519 - +0.8
237,521 - -1.2
237,526 + -0.4
237,531 + -0.5
237,533 - +0.1
237,533 - +0.6
237,541 + +1.1
237,541 + +0.2
237,541 + +0.5
237,541 + -0.2
237,545 - -0.0
237,557 - -3.9
237,563 + +0.7
237,571 - +0.3
237,571 - -0.5
237,817 - +0.2
237,868 + +0.8
238,080 + 15204 mRNA_6836 0.26 +1.0
238,426 - 15204 mRNA_6836 0.57 -0.8
238,477 + 15204 mRNA_6836 0.62 +0.1
238,528 - 15204 mRNA_6836 0.66 -0.0
238,821 - +0.3
238,848 - +0.4
238,855 + -0.1
238,857 + +0.7
238,859 + +0.4
238,866 + -2.0
238,993 - -0.1
239,016 - +0.7
239,025 - +0.4
239,027 + +1.0
239,040 - -0.8
239,057 - +0.5
239,058 + -1.0
239,060 + -0.2
239,073 + -2.4
239,158 + -1.3
239,159 - -0.7
239,185 - -0.2
239,201 + -0.4
239,218 - +0.4
239,275 - -1.1
239,293 - +1.8
239,323 + -2.8
239,470 - +0.7
239,622 - 15205 mRNA_6837 0.16 -0.3
239,624 - 15205 mRNA_6837 0.16 -0.8
239,630 + 15205 mRNA_6837 0.17 -0.4
239,770 + 15205 mRNA_6837 0.27 +1.6

Or see this region's nucleotide sequence