Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7071

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15438 and 15439 are separated by 370 nucleotides15439 and 15440 are separated by 286 nucleotides mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812,673 to 814,209 15438 mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814,580 to 815,327 15439 mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815,614 to 818,476 15440

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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813,730 + 15438 mRNA_7070 0.69 +0.2
813,825 + 15438 mRNA_7070 0.75 +1.2
814,067 - -1.9
814,185 + -1.2
814,322 + -0.4
814,333 + +0.0
814,344 - +0.9
814,354 - +0.4
814,357 - -1.8
814,357 + +0.8
814,368 + +0.3
814,407 - -1.0
814,417 - -0.1
814,472 - -0.1
814,478 - +1.0
814,532 + +0.4
814,652 + +0.5
814,665 - 15439 mRNA_7071 0.11 +0.4
814,807 - 15439 mRNA_7071 0.30 +0.4
814,820 - 15439 mRNA_7071 0.32 -1.3
815,260 - -0.1
815,415 + +0.7
815,576 + +1.3

Or see this region's nucleotide sequence