Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7130

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15497 and 15498 are separated by 334 nucleotides15498 and 15499 are separated by 451 nucleotides mRNA_7129: 15497 - K10627 RAD18 E3 ubiquitin-protein ligase RAD18, at 945,655 to 947,671 15497 mRNA_7130: 15498 - KOG3077 Uncharacterized conserved protein, at 948,006 to 949,396 15498 mRNA_7131: 15499 - K17800 LETM1, MDM38 LETM1 and EF-hand domain-containing protein 1, mitochondrial, at 949,848 to 952,557 15499

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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947,120 - 15497 mRNA_7129 0.73 -0.4
947,265 - 15497 mRNA_7129 0.80 -0.2
947,421 - 15497 mRNA_7129 0.88 -1.8
947,429 + 15497 mRNA_7129 0.88 -0.1
947,440 + 15497 mRNA_7129 0.88 -0.4
947,537 - +0.1
947,576 - +0.8
947,595 - +0.4
947,722 - +2.3
947,871 - -0.0
947,879 - +0.1
947,882 + -0.4
947,977 - -0.4
948,002 - -0.4
948,009 - -0.3
948,009 - +0.4
948,014 - -0.1
948,017 - +0.0
948,018 - +0.9
948,024 + +0.5
948,163 + 15498 mRNA_7130 0.11 -0.4
948,167 + 15498 mRNA_7130 0.12 -1.5
948,468 - 15498 mRNA_7130 0.33 +1.0
949,160 - 15498 mRNA_7130 0.83 -1.0
949,588 + +0.2
949,603 + +0.9
949,746 - +1.2

Or see this region's nucleotide sequence