Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7144

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15511 and 15512 are separated by 921 nucleotides15512 and 15513 are separated by 442 nucleotides mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984,352 to 987,514 15511 mRNA_7144: 15512 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 988,436 to 990,722 15512 mRNA_7145: 15513 - BLAST putative ccch zinc finger dna binding protein [Eu..., at 991,165 to 992,673 15513

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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987,791 - +0.2
987,800 + -1.1
987,922 + -0.8
988,061 - +0.4
988,070 + -0.0
988,083 - -0.2
988,194 - +0.4
988,202 + +0.1
988,211 - -0.3
988,219 + +0.8
988,606 - -0.4
989,094 - 15512 mRNA_7144 0.29 -0.1
989,721 + 15512 mRNA_7144 0.56 +1.0
990,289 + 15512 mRNA_7144 0.81 +1.4
990,447 - 15512 mRNA_7144 0.88 -0.1
990,595 + -0.4
990,867 - +1.2
990,963 + +0.0
991,313 + +1.6
991,525 + 15513 mRNA_7145 0.24 -1.1

Or see this region's nucleotide sequence