Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7175

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15542 and 15543 are separated by 419 nucleotides15543 and 15544 are separated by 220 nucleotides mRNA_7174: 15542 - K11131 DKC1, NOLA4, CBF5 H/ACA ribonucleoprotein complex subunit 4, at 1,051,131 to 1,053,156 15542 mRNA_7175: 15543 - K12272 SRPRB, SRP102 signal recognition particle receptor subunit beta, at 1,053,576 to 1,055,087 15543 mRNA_7176: 15544 - KOG4635 Vacuolar import and degradation protein, at 1,055,308 to 1,056,885 15544

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,052,980 - +0.9
1,053,113 + -0.3
1,053,241 + -0.4
1,053,263 + -0.1
1,053,526 - +0.3
1,053,538 + +0.2
1,053,545 + -1.1
1,053,546 - +0.2
1,053,570 + +0.5
1,054,161 + 15543 mRNA_7175 0.39 -1.8
1,054,447 + 15543 mRNA_7175 0.58 -0.8
1,054,553 - 15543 mRNA_7175 0.65 -0.4
1,054,999 - -1.6
1,055,006 - +1.2
1,055,052 - +0.2
1,055,191 - +0.7
1,055,199 + +0.3
1,055,204 + -3.4
1,055,254 + +0.6
1,055,345 + -0.6
1,055,372 + -0.2
1,056,076 - 15544 mRNA_7176 0.49 +0.6

Or see this region's nucleotide sequence