Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7237

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15604 and 15605 are separated by 282 nucleotides15605 and 15606 are separated by 482 nucleotides mRNA_7236: 15604 - Hypothetical Protein, at 1,192,664 to 1,193,230 15604 mRNA_7237: 15605 - Hypothetical Protein, at 1,193,513 to 1,195,819 15605 mRNA_7238: 15606 - Hypothetical Protein, at 1,196,302 to 1,197,931 15606

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,192,555 - +0.2
1,192,562 + +1.4
1,192,831 + 15604 mRNA_7236 0.29 +0.0
1,192,862 - 15604 mRNA_7236 0.35 -1.5
1,193,178 - +0.2
1,193,190 + -0.5
1,193,307 - +0.6
1,193,346 - -0.3
1,193,593 + +0.2
1,193,688 + +1.3
1,194,443 + 15605 mRNA_7237 0.40 -1.1
1,194,735 - 15605 mRNA_7237 0.53 +0.8
1,194,887 - 15605 mRNA_7237 0.60 +0.7
1,195,295 - 15605 mRNA_7237 0.77 +0.3
1,195,322 + 15605 mRNA_7237 0.78 -0.2
1,196,139 + -1.3
1,196,140 + +0.6
1,196,202 + +2.3
1,196,202 - +0.2
1,196,359 + +1.0
1,196,489 - 15606 mRNA_7238 0.11 -0.6
1,196,621 - 15606 mRNA_7238 0.20 +0.4
1,196,639 - 15606 mRNA_7238 0.21 -0.2
1,196,736 + 15606 mRNA_7238 0.27 +0.1

Or see this region's nucleotide sequence