Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7271

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15638 and 15639 are separated by 358 nucleotides mRNA_7270: 15638 - ProSiteProfiles-TEA domain profile.-PS51088, at 1,266,504 to 1,267,966 15638 mRNA_7271: 15639 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088, at 1,268,325 to 1,269,363 15639

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,267,745 - 15638 mRNA_7270 0.85 +0.5
1,267,758 + 15638 mRNA_7270 0.86 -0.8
1,267,767 - 15638 mRNA_7270 0.86 +0.2
1,267,860 - +0.2
1,267,879 - +1.5
1,267,890 - -0.6
1,267,906 - -0.6
1,268,038 - -0.6
1,268,039 + -1.1
1,268,181 + -0.3
1,268,181 + -0.4
1,268,181 + +0.4
1,268,201 - -0.1
1,268,231 - -1.3
1,268,348 - -1.5
1,268,351 + +0.6
1,268,355 + -0.7
1,268,365 + +0.2
1,268,369 - +0.2
1,268,462 + 15639 mRNA_7271 0.13 -0.4
1,268,542 + 15639 mRNA_7271 0.21 +0.1
1,268,587 - 15639 mRNA_7271 0.25 -0.9
1,268,693 + 15639 mRNA_7271 0.35 +1.9
1,268,723 - 15639 mRNA_7271 0.38 +1.7
1,268,769 - 15639 mRNA_7271 0.43 +0.7
1,268,771 + 15639 mRNA_7271 0.43 +0.5
1,268,893 + 15639 mRNA_7271 0.55 -0.7
1,268,895 - 15639 mRNA_7271 0.55 -0.1
1,268,896 + 15639 mRNA_7271 0.55 +0.4
1,268,896 + 15639 mRNA_7271 0.55 -0.1
1,268,914 + 15639 mRNA_7271 0.57 -0.4
1,268,917 - 15639 mRNA_7271 0.57 +0.3
1,268,921 + 15639 mRNA_7271 0.57 -0.1
1,268,931 + 15639 mRNA_7271 0.58 -0.9
1,268,958 - 15639 mRNA_7271 0.61 +0.1
1,268,965 + 15639 mRNA_7271 0.62 +0.2
1,268,967 - 15639 mRNA_7271 0.62 +0.9
1,268,968 - 15639 mRNA_7271 0.62 +0.6
1,268,985 + 15639 mRNA_7271 0.64 +0.1
1,269,071 - 15639 mRNA_7271 0.72 +0.2
1,269,072 - 15639 mRNA_7271 0.72 +0.4
1,269,122 - 15639 mRNA_7271 0.77 -0.7
1,269,184 - 15639 mRNA_7271 0.83 +0.1
1,269,222 + 15639 mRNA_7271 0.86 -0.2
1,269,266 + +0.5
1,269,325 + -0.6
1,269,420 + -0.6
1,269,657 - +1.0
1,269,678 + +0.2
1,269,690 + +1.1
1,269,777 + +1.0
1,269,905 - +0.4
1,269,982 + +0.5
1,269,982 + +0.4
1,269,984 - +0.2
1,270,101 + -1.7
1,270,227 - +0.0

Or see this region's nucleotide sequence