Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7282

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15649 and 15650 are separated by 150 nucleotides15650 and 15651 are separated by 441 nucleotides mRNA_7281: 15649 - HMMPfam-FAR1 DNA-binding domain-PF03101, at 1,288,862 to 1,290,260 15649 mRNA_7282: 15650 - HMMPfam-Amidohydrolase family-PF07969,HMMPfam-Amidohydrolase-PF13594,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1,290,411 to 1,292,739 15650 mRNA_7283: 15651 - KOG1535 Predicted fumarylacetoacetate hydralase, at 1,293,181 to 1,295,231 15651

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
1,289,423 + 15649 mRNA_7281 0.40 +0.3
1,289,434 + 15649 mRNA_7281 0.41 +0.1
1,289,440 - 15649 mRNA_7281 0.41 -0.1
1,289,520 - 15649 mRNA_7281 0.47 -1.3
1,289,642 + 15649 mRNA_7281 0.56 +0.7
1,289,812 + 15649 mRNA_7281 0.68 -0.7
1,289,964 - 15649 mRNA_7281 0.79 -0.1
1,289,995 - 15649 mRNA_7281 0.81 +0.3
1,290,195 + +0.2
1,290,443 + +0.7
1,290,533 + +2.0
1,290,561 + +0.1
1,290,577 + -0.4
1,290,872 + 15650 mRNA_7282 0.20 -0.7
1,291,320 + 15650 mRNA_7282 0.39 +0.3
1,291,323 - 15650 mRNA_7282 0.39 +1.2
1,291,385 + 15650 mRNA_7282 0.42 +0.3
1,291,385 + 15650 mRNA_7282 0.42 -2.4
1,291,511 - 15650 mRNA_7282 0.47 +1.0
1,291,626 + 15650 mRNA_7282 0.52 -0.1
1,291,756 - 15650 mRNA_7282 0.58 +1.0
1,292,083 + 15650 mRNA_7282 0.72 -1.2
1,292,108 + 15650 mRNA_7282 0.73 +1.1
1,292,237 - 15650 mRNA_7282 0.78 -0.6
1,292,314 - 15650 mRNA_7282 0.82 +0.1
1,292,319 + 15650 mRNA_7282 0.82 -1.0
1,292,331 - 15650 mRNA_7282 0.82 +0.1
1,292,371 + 15650 mRNA_7282 0.84 +1.7
1,292,423 + 15650 mRNA_7282 0.86 -1.3
1,292,630 + +0.0
1,292,885 - -1.1
1,292,963 + +0.3
1,292,979 + +0.1
1,293,008 + -0.1
1,293,134 + +1.4
1,293,262 - +1.9
1,293,426 + 15651 mRNA_7283 0.12 -0.6
1,293,557 - 15651 mRNA_7283 0.18 -0.4
1,293,593 + 15651 mRNA_7283 0.20 -0.1
1,293,663 - 15651 mRNA_7283 0.24 -0.3
1,293,725 + 15651 mRNA_7283 0.27 -0.9
1,293,726 - 15651 mRNA_7283 0.27 -0.1
1,293,730 + 15651 mRNA_7283 0.27 -1.1
1,293,734 - 15651 mRNA_7283 0.27 +0.8

Or see this region's nucleotide sequence