Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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14 + +0.6
14 + +0.6
14 + +3.0
14 + -0.5
22 + +0.9
29 + -0.7
35 + -2.3
45 + +0.8
66 + +1.3
68 + -1.7
71 - +0.8
105 + -1.0
120 - +0.1
120 + +1.2
121 - +0.2
122 - +2.3
126 + -0.0
126 + +1.7
131 - +1.7
135 - +0.8
135 + -1.5
135 + +0.4
135 + +1.7
135 - +0.7
142 - +0.1
148 + +0.1
153 + +0.3
159 - -0.0
159 - +0.2
161 + -1.8
168 - -0.5
195 + +0.3
233 + +0.4
263 + 15688 mRNA_7320 0.11 -0.4
267 - 15688 mRNA_7320 0.11 -2.0
301 - 15688 mRNA_7320 0.14 +0.9
310 - 15688 mRNA_7320 0.14 -0.2
313 + 15688 mRNA_7320 0.15 +0.3
313 + 15688 mRNA_7320 0.15 -0.4
319 + 15688 mRNA_7320 0.15 +1.6
322 - 15688 mRNA_7320 0.15 +0.7
340 - 15688 mRNA_7320 0.16 +0.0
345 + 15688 mRNA_7320 0.17 +0.4
357 + 15688 mRNA_7320 0.18 -0.4
359 + 15688 mRNA_7320 0.18 +0.6
365 - 15688 mRNA_7320 0.18 +1.2
401 - 15688 mRNA_7320 0.21 +2.0
401 - 15688 mRNA_7320 0.21 -0.3
401 + 15688 mRNA_7320 0.21 -1.5
405 + 15688 mRNA_7320 0.21 +0.4
415 + 15688 mRNA_7320 0.22 +0.9
428 - 15688 mRNA_7320 0.23 +0.1
461 - 15688 mRNA_7320 0.25 +0.1
462 + 15688 mRNA_7320 0.25 +1.2
466 - 15688 mRNA_7320 0.25 +0.5
482 + 15688 mRNA_7320 0.26 +1.0
488 - 15688 mRNA_7320 0.27 -0.1
573 - 15688 mRNA_7320 0.33 +0.3
594 - 15688 mRNA_7320 0.34 -0.9
595 + 15688 mRNA_7320 0.34 -1.2
595 + 15688 mRNA_7320 0.34 -1.2
625 - 15688 mRNA_7320 0.36 +1.2
644 + 15688 mRNA_7320 0.38 -1.3
644 + 15688 mRNA_7320 0.38 -0.6
648 + 15688 mRNA_7320 0.38 +0.0
654 - 15688 mRNA_7320 0.38 -1.1
654 + 15688 mRNA_7320 0.38 +0.9
713 + 15688 mRNA_7320 0.43 -1.5
753 - 15688 mRNA_7320 0.45 +0.6
756 - 15688 mRNA_7320 0.46 +0.2
763 + 15688 mRNA_7320 0.46 +0.4
765 + 15688 mRNA_7320 0.46 +0.1
778 + 15688 mRNA_7320 0.47 -0.3
811 - 15688 mRNA_7320 0.49 +0.8
921 + 15688 mRNA_7320 0.57 +0.7
945 + 15688 mRNA_7320 0.59 -0.6
1,059 + 15688 mRNA_7320 0.67 -0.7
1,167 + 15688 mRNA_7320 0.74 -0.8
1,174 + 15688 mRNA_7320 0.75 +0.2
1,182 - 15688 mRNA_7320 0.75 +0.8
1,196 + 15688 mRNA_7320 0.76 -0.0
1,218 + 15688 mRNA_7320 0.78 +0.5
1,258 + 15688 mRNA_7320 0.81 +0.3
1,326 - 15688 mRNA_7320 0.85 -0.4
1,360 + 15688 mRNA_7320 0.88 -0.3
1,366 + 15688 mRNA_7320 0.88 -1.2
1,497 - +0.3
1,518 + -0.5
1,582 + -0.6
1,666 - -0.5
1,675 + +1.0
1,789 - +0.7
1,907 + +1.4
1,929 + -2.3
1,948 + +2.3
2,105 - -0.1
2,297 - 15689 mRNA_7321 0.19 +0.7
2,508 - 15689 mRNA_7321 0.31 -0.6
2,521 + 15689 mRNA_7321 0.32 +0.1
2,526 + 15689 mRNA_7321 0.32 +0.4
2,529 - 15689 mRNA_7321 0.32 -0.4
2,529 - 15689 mRNA_7321 0.32 -1.2

Or see this region's nucleotide sequence