Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7347

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15714 and 15715 are separated by 282 nucleotides15715 and 15716 are separated by 374 nucleotides mRNA_7346: 15714 - Hypothetical Protein, at 58,216 to 59,419 15714 mRNA_7347: 15715 - K09495 CCT3, TRIC5 T-complex protein 1 subunit gamma, at 59,702 to 62,348 15715 mRNA_7348: 15716 - KOG0364 Chaperonin complex component, TCP-1 gamma subunit (CCT3), at 62,723 to 63,875 15716

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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58,771 + 15714 mRNA_7346 0.46 +0.2
59,183 - 15714 mRNA_7346 0.80 +0.2
59,308 - +0.1
59,483 - +1.7
59,516 + -2.5
59,635 - -1.3
59,642 + +0.3
59,645 + -0.0
59,649 + +0.3
62,393 - -1.1
62,400 + -0.2
62,591 + -0.6
62,865 + 15716 mRNA_7348 0.12 -1.1

Or see this region's nucleotide sequence