Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7557

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15924 and 15925 are separated by 101 nucleotides mRNA_7556: 15924 - K12734 PPIL3 peptidyl-prolyl cis-trans isomerase-like 3, at 554,930 to 556,179 15924 mRNA_7557: 15925 - Hypothetical Protein, at 556,281 to 558,919 15925

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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555,421 + 15924 mRNA_7556 0.39 +0.3
555,695 - 15924 mRNA_7556 0.61 -0.8
556,003 + 15924 mRNA_7556 0.86 +0.2
556,285 + -2.2
556,291 - -0.8
556,299 + -0.6
556,435 - +0.0
556,481 + -0.1
557,157 + 15925 mRNA_7557 0.33 +0.7
557,900 + 15925 mRNA_7557 0.61 -0.4
557,915 + 15925 mRNA_7557 0.62 +0.2
558,752 - +0.3
559,030 - +0.2
559,220 - +0.1
559,223 - -1.3
559,224 + +0.2
559,225 - -0.6
559,228 - +0.1
559,230 - +0.3
559,231 + +1.4
559,233 - +1.6
559,233 - -1.4
559,235 + +0.4
559,246 - +0.1
559,246 - +0.2
559,253 - -0.7
559,257 - -1.3
559,260 - -0.6
559,265 - -0.0
559,265 + -0.4
559,317 - -0.9
559,318 + +0.2
559,330 - -2.3
559,330 - +0.4
559,337 + -0.5
559,348 - +0.5
559,388 - +0.3
559,396 + -2.1
559,398 + -0.3
559,398 + +0.1
559,446 - -0.0
559,448 + +2.2
559,449 - +0.6
559,450 - -0.5
559,450 - +1.7
559,454 - +0.1
559,468 - -0.2
559,477 + +0.1
559,477 - -0.7
559,482 - +0.4
559,627 + +0.6
559,629 - -3.8
559,633 + +0.1
559,663 - +0.3
559,769 - -0.0

Or see this region's nucleotide sequence