Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7584

Experiment: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15951 and 15952 are separated by 294 nucleotides15952 and 15953 are separated by 193 nucleotides mRNA_7583: 15951 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 616,198 to 617,544 15951 mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617,839 to 618,826 15952 mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619,020 to 621,044 15953

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
617,080 + 15951 mRNA_7583 0.65 -0.3
617,214 + 15951 mRNA_7583 0.75 +1.4
617,251 - 15951 mRNA_7583 0.78 +0.9
617,349 + 15951 mRNA_7583 0.85 -2.5
617,364 - 15951 mRNA_7583 0.87 -0.2
617,484 + -1.1
617,622 + +2.1
617,633 - -0.2
617,686 + -0.6
617,794 + -0.1
617,833 + -0.4
618,089 - 15952 mRNA_7584 0.25 -0.3
618,239 - 15952 mRNA_7584 0.40 -2.1
618,689 - 15952 mRNA_7584 0.86 -1.4
618,698 + 15952 mRNA_7584 0.87 +0.5
618,814 + +0.3
618,825 + -0.7
618,843 - +0.6
618,960 - +0.2
618,969 - -1.0
618,971 - -0.6
618,974 + -0.3
619,683 - 15953 mRNA_7585 0.33 +0.6
619,717 - 15953 mRNA_7585 0.34 -0.7
619,718 - 15953 mRNA_7585 0.34 -1.3

Or see this region's nucleotide sequence