Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7651

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16018 and 16019 are separated by 725 nucleotides16019 and 16020 are separated by 316 nucleotides mRNA_7650: 16018 - K08008 NOX, GP91 NADPH oxidase, at 765,571 to 768,508 16018 mRNA_7651: 16019 - K03671 trxA thioredoxin 1, at 769,234 to 769,814 16019 mRNA_7652: 16020 - HMMPfam-XPG I-region-PF00867,PRINTS-Xeroderma pigmentosum group G/yeast RAD superfamily signature-PR00853,SMART-Xeroderma pigmentosum G I-region-SM00484,SUPERFAMILY--SSF47807,SUPERFAMILY--SSF88723, at 770,131 to 772,818 16020

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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768,270 - -0.5
768,454 + -0.5
768,454 - +1.1
768,588 - -0.2
768,896 - +0.3
768,908 + +0.2
768,922 + -0.3
769,015 - -1.9
769,027 - -0.4
769,066 + +0.2
769,177 - -0.6
769,194 + -1.0
769,320 - 16019 mRNA_7651 0.15 -0.2
769,340 - 16019 mRNA_7651 0.18 -0.3
769,341 + 16019 mRNA_7651 0.18 -0.9
769,372 + 16019 mRNA_7651 0.24 -0.6
769,498 - 16019 mRNA_7651 0.45 -2.3
769,941 - +0.4
770,072 + +0.3
770,243 + -1.2
770,281 + +1.1
770,373 - +0.9
770,386 - +1.5
770,681 + 16020 mRNA_7652 0.20 -0.1
770,690 + 16020 mRNA_7652 0.21 -0.1

Or see this region's nucleotide sequence