Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7767

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16135 and 16136 are separated by 189 nucleotides mRNA_7767: 16135 - ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896, at 1,018,702 to 1,022,173 16135 mRNA_7768: 16136 - SUPERFAMILY--SSF52058, at 1,022,363 to 1,024,489 16136

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,017,740 - +0.5
1,017,771 - -0.5
1,017,917 - -0.0
1,018,056 - +0.7
1,018,068 + -0.9
1,018,074 + +0.3
1,018,221 - -0.7
1,018,233 - -1.0
1,018,234 + -1.5
1,018,278 - -0.1
1,018,385 - +0.2
1,018,386 + +0.9
1,018,405 - -1.5
1,018,412 + -0.9
1,018,427 + +0.0
1,018,578 + -0.8
1,018,579 + +0.0
1,018,585 - +1.6
1,018,728 - -0.3
1,018,732 - +0.1
1,018,831 - -0.8
1,018,881 + -1.3
1,018,884 + -0.8
1,019,013 - +0.3
1,019,573 + 16135 mRNA_7767 0.25 +0.1
1,019,743 - 16135 mRNA_7767 0.30 +0.1
1,019,744 + 16135 mRNA_7767 0.30 -0.4
1,019,845 - 16135 mRNA_7767 0.33 +1.5
1,019,871 - 16135 mRNA_7767 0.34 +1.0
1,019,907 - 16135 mRNA_7767 0.35 +0.3
1,020,146 + 16135 mRNA_7767 0.42 +1.6
1,020,472 + 16135 mRNA_7767 0.51 -2.1
1,020,475 + 16135 mRNA_7767 0.51 -0.9
1,020,478 - 16135 mRNA_7767 0.51 +0.3
1,020,657 + 16135 mRNA_7767 0.56 -0.6
1,021,304 + 16135 mRNA_7767 0.75 +0.4
1,021,372 - 16135 mRNA_7767 0.77 +0.1
1,021,439 - 16135 mRNA_7767 0.79 +0.8
1,021,449 + 16135 mRNA_7767 0.79 +1.3
1,021,668 + 16135 mRNA_7767 0.85 -0.7
1,021,750 - 16135 mRNA_7767 0.88 +0.9
1,021,970 + +0.8
1,022,160 + -0.6
1,022,166 + +0.6
1,022,171 - -1.0
1,022,297 + +0.6
1,022,330 + +0.4
1,022,414 - +1.7
1,022,414 - -1.3
1,022,495 - +0.7
1,022,758 - 16136 mRNA_7768 0.19 -0.7
1,022,812 + 16136 mRNA_7768 0.21 -0.6
1,023,054 - 16136 mRNA_7768 0.32 +0.3

Or see this region's nucleotide sequence