Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7793

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16161 and 16162 are separated by 249 nucleotides mRNA_7793: 16161 - KOG2533 Permease of the major facilitator superfamily, at 1,079,751 to 1,082,050 16161 mRNA_7794: 16162 - BLAST rRNA (adenine-N6,N6)-dimethyltransferase [Rhizoctonia..., at 1,082,300 to 1,083,358 16162

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,078,765 + -1.2
1,078,773 - +3.3
1,078,776 + +0.0
1,078,925 + +0.4
1,079,128 + -1.9
1,079,222 - -0.6
1,079,246 - -0.3
1,079,248 + -0.4
1,079,255 + -0.1
1,079,326 + -0.8
1,079,329 - +0.2
1,079,384 + +0.1
1,079,398 - +0.3
1,079,419 - +0.2
1,079,529 - +0.3
1,079,530 - +0.1
1,079,532 - +1.2
1,079,549 + +0.0
1,079,557 - +0.9
1,079,557 - +1.3
1,079,562 + -0.3
1,079,562 + +0.9
1,079,568 + +0.4
1,079,658 - -0.6
1,079,743 - -0.3
1,079,995 - 16161 mRNA_7793 0.11 -1.2
1,080,000 - 16161 mRNA_7793 0.11 +1.2
1,080,145 - 16161 mRNA_7793 0.17 +0.4
1,080,177 - 16161 mRNA_7793 0.19 -0.8
1,080,379 + 16161 mRNA_7793 0.27 -0.3
1,080,381 + 16161 mRNA_7793 0.27 +0.3
1,080,752 - 16161 mRNA_7793 0.44 -1.5
1,080,763 + 16161 mRNA_7793 0.44 -0.3
1,080,896 - 16161 mRNA_7793 0.50 +0.6
1,080,953 - 16161 mRNA_7793 0.52 +1.8
1,081,174 - 16161 mRNA_7793 0.62 +0.5
1,081,175 + 16161 mRNA_7793 0.62 -0.6
1,081,346 + 16161 mRNA_7793 0.69 +0.7
1,081,622 + 16161 mRNA_7793 0.81 +1.7
1,081,854 - -0.1
1,082,055 + +1.4
1,082,305 - -0.1
1,082,476 + 16162 mRNA_7794 0.17 -0.2
1,082,732 - 16162 mRNA_7794 0.41 -0.8
1,082,732 + 16162 mRNA_7794 0.41 -0.9
1,082,894 + 16162 mRNA_7794 0.56 +0.7
1,082,925 + 16162 mRNA_7794 0.59 +1.5
1,082,930 - 16162 mRNA_7794 0.59 +0.5
1,082,931 + 16162 mRNA_7794 0.60 -0.2
1,082,932 - 16162 mRNA_7794 0.60 -1.7
1,082,949 - 16162 mRNA_7794 0.61 +0.3
1,082,956 - 16162 mRNA_7794 0.62 +0.1
1,082,957 + 16162 mRNA_7794 0.62 -0.9
1,083,044 - 16162 mRNA_7794 0.70 +1.4
1,083,045 - 16162 mRNA_7794 0.70 +0.5

Or see this region's nucleotide sequence