Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7801

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16168 and 16169 are separated by 826 nucleotides16169 and 16170 are separated by 506 nucleotides mRNA_7800: 16168 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,096,651 to 1,099,129 16168 mRNA_7801: 16169 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,099,956 to 1,102,203 16169 mRNA_7802: 16170 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,102,710 to 1,107,641 16170

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,099,265 - +0.6
1,099,339 - +0.4
1,099,395 - -0.8
1,099,511 - +0.4
1,099,552 - -2.1
1,099,568 - -0.3
1,099,574 - +0.0
1,099,595 + -1.3
1,099,717 + -0.1
1,099,717 - -0.0
1,099,852 + +0.7
1,100,446 + 16169 mRNA_7801 0.22 +0.3
1,100,581 + 16169 mRNA_7801 0.28 +1.4
1,100,712 - 16169 mRNA_7801 0.34 -0.3
1,100,758 + 16169 mRNA_7801 0.36 -1.6
1,100,766 + 16169 mRNA_7801 0.36 +0.4
1,100,924 - 16169 mRNA_7801 0.43 -0.1
1,101,243 + 16169 mRNA_7801 0.57 +1.0
1,101,625 + 16169 mRNA_7801 0.74 -0.1
1,101,630 + 16169 mRNA_7801 0.74 +1.4
1,102,072 + -0.6
1,102,213 - +0.1
1,102,380 + +0.6
1,102,430 + -0.7
1,102,499 - -1.9
1,102,524 + -0.2
1,102,685 + +0.0

Or see this region's nucleotide sequence