Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7847

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16215 and 16216 are separated by 606 nucleotides mRNA_7847: 16215 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 1,205,985 to 1,207,828 16215 mRNA_7848: 16216 - BLAST LYR MOTIF-CONTAINING PROTEIN 7 [Ceraceosorus bombacis], at 1,208,435 to 1,209,073 16216

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,205,063 - -2.0
1,205,072 - +0.9
1,205,096 - -0.0
1,205,102 + +0.0
1,205,105 - -0.4
1,205,109 + +0.9
1,205,114 + -0.1
1,205,122 - +0.6
1,205,140 - +0.1
1,205,144 + +0.2
1,205,145 + +0.2
1,205,168 - -0.3
1,205,174 - +0.4
1,205,189 - +0.1
1,205,192 + -0.4
1,205,198 - +0.8
1,205,204 - +0.7
1,205,208 - -0.3
1,205,210 - -0.8
1,205,211 + -1.5
1,205,215 - -1.8
1,205,222 + +0.3
1,205,326 + -0.2
1,205,364 + +0.3
1,205,367 - +0.2
1,205,384 - +0.5
1,205,386 + +0.5
1,205,391 + +0.9
1,205,405 - -0.7
1,205,406 - -1.7
1,205,412 - +1.1
1,205,415 - -1.3
1,205,416 + +0.5
1,205,417 + +0.2
1,205,451 - +0.1
1,205,565 - +0.1
1,205,573 + +0.0
1,205,700 - -1.2
1,205,830 + -0.2
1,205,837 - -0.0
1,205,846 + -0.5
1,205,849 - -0.3
1,205,862 + -0.4
1,205,862 + -0.2
1,205,995 + +0.4
1,205,997 - -0.8
1,206,153 + +0.4
1,206,413 - 16215 mRNA_7847 0.23 -0.9
1,206,511 - 16215 mRNA_7847 0.29 -0.1
1,206,563 + 16215 mRNA_7847 0.31 +0.7
1,206,868 - 16215 mRNA_7847 0.48 +0.2
1,207,414 + 16215 mRNA_7847 0.77 -0.8
1,207,526 + 16215 mRNA_7847 0.84 -1.3
1,208,146 - -0.2
1,208,175 + +0.2
1,208,587 - 16216 mRNA_7848 0.24 -1.9

Or see this region's nucleotide sequence