Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7897

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16264 and 16265 are separated by 351 nucleotides16265 and 16266 are separated by 218 nucleotides mRNA_7896: 16264 - K01783 rpe, RPE ribulose-phosphate 3-epimerase, at 1,324,281 to 1,325,324 16264 mRNA_7897: 16265 - K10872 DMC1 meiotic recombination protein DMC1, at 1,325,676 to 1,327,786 16265 mRNA_7898: 16266 - K12660 rhmA 2-dehydro-3-deoxy-L-rhamnonate aldolase, at 1,328,005 to 1,329,095 16266

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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1,325,415 + +0.7
1,325,920 - 16265 mRNA_7897 0.12 -0.3
1,326,034 + 16265 mRNA_7897 0.17 +1.2
1,326,046 + 16265 mRNA_7897 0.18 -0.0
1,326,379 - 16265 mRNA_7897 0.33 +0.5
1,326,762 + 16265 mRNA_7897 0.51 -0.3
1,326,768 - 16265 mRNA_7897 0.52 -1.0
1,326,878 + 16265 mRNA_7897 0.57 +0.8
1,327,319 + 16265 mRNA_7897 0.78 +1.1
1,327,803 - -1.5
1,327,889 - +0.4
1,328,051 + -1.0
1,328,224 - 16266 mRNA_7898 0.20 +1.0
1,328,515 - 16266 mRNA_7898 0.47 +0.0

Or see this region's nucleotide sequence