Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7911

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16279 and 16280 are separated by 760 nucleotides mRNA_7911: 16279 - K03015 RPB7, POLR2G DNA-directed RNA polymerase II subunit RPB7, at 1,441 to 2,386 16279 mRNA_7912: 16280 - K11434 PRMT1 type I protein arginine methyltransferase, at 3,147 to 4,682 16280

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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453 + +0.1
453 + +0.3
464 + +1.5
486 + -1.4
682 - +1.3
711 + -0.1
735 + -0.4
746 + -0.3
768 + -1.7
872 - +2.3
1,045 - -1.3
1,166 + -0.3
2,601 - +0.7
2,624 + +1.3
2,636 - -0.8
2,650 - -1.5
2,781 + -1.2
2,783 - +0.5
2,928 + +0.3
2,928 + +0.6
2,928 + +0.2
2,929 + -0.0
2,934 - +0.4
2,947 - -1.3
2,951 + +1.0
2,951 + -0.1
2,954 - +0.8
3,110 + +0.2
3,236 + +0.5
3,375 - 16280 mRNA_7912 0.15 -2.1

Or see this region's nucleotide sequence