Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7934

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16301 and 16302 are separated by 461 nucleotides16302 and 16303 are separated by 774 nucleotides mRNA_7933: 16301 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 48,535 to 49,423 16301 mRNA_7934: 16302 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 49,885 to 50,735 16302 mRNA_7935: 16303 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 51,510 to 51,923 16303

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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49,066 + 16301 mRNA_7933 0.60 +0.1
49,148 - 16301 mRNA_7933 0.69 +1.3
49,165 + 16301 mRNA_7933 0.71 -1.4
49,288 + 16301 mRNA_7933 0.85 +0.4
49,293 - 16301 mRNA_7933 0.85 +0.1
49,475 - +0.7
49,708 - -1.4
49,711 - +0.5
49,729 + -1.9
49,729 + -0.7
49,774 + -0.4
49,786 - -0.4
49,792 - -0.1
49,804 - +1.3
49,861 + +1.1
50,007 - 16302 mRNA_7934 0.14 -0.1
50,038 + 16302 mRNA_7934 0.18 +0.4
50,043 - 16302 mRNA_7934 0.19 -0.3
50,054 + 16302 mRNA_7934 0.20 +0.3
50,069 + 16302 mRNA_7934 0.22 -1.3
50,186 - 16302 mRNA_7934 0.35 +0.8
50,457 - 16302 mRNA_7934 0.67 -1.0
50,484 - 16302 mRNA_7934 0.70 +0.7
50,585 + 16302 mRNA_7934 0.82 +0.3
50,628 - 16302 mRNA_7934 0.87 -0.7
50,656 - +0.1
50,782 - +0.0
50,929 + -1.3
51,081 + +0.3
51,427 + -0.3
51,446 + +1.0

Or see this region's nucleotide sequence