Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8079

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16446 and 16447 are separated by 260 nucleotides16447 and 16448 are separated by 168 nucleotides mRNA_8078: 16446 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 371,130 to 372,195 16446 mRNA_8079: 16447 - BLAST PRMT5-domain-containing protein [Sanghuangporus baumii], at 372,456 to 373,383 16447 mRNA_8080: 16448 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 373,552 to 376,166 16448

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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371,782 - 16446 mRNA_8078 0.61 -1.1
371,802 - 16446 mRNA_8078 0.63 +0.4
371,827 - 16446 mRNA_8078 0.65 -0.5
371,956 - 16446 mRNA_8078 0.77 +1.7
371,958 - 16446 mRNA_8078 0.78 -0.9
371,969 + 16446 mRNA_8078 0.79 +1.0
372,096 - +0.9
372,110 + +0.7
372,267 + +1.0
372,527 + -0.5
372,675 - 16447 mRNA_8079 0.24 +0.4
373,117 - 16447 mRNA_8079 0.71 -0.9
373,124 + 16447 mRNA_8079 0.72 -0.9
373,263 - 16447 mRNA_8079 0.87 +1.0
373,269 + 16447 mRNA_8079 0.88 +1.6
373,409 - -0.2
373,416 + +0.8
373,550 + -0.0
373,554 - +0.0
373,561 - -0.9
373,856 + 16448 mRNA_8080 0.12 +1.2
374,267 - 16448 mRNA_8080 0.27 +1.3
374,292 + 16448 mRNA_8080 0.28 +0.3

Or see this region's nucleotide sequence