Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8112

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16479 and 16480 are separated by 134 nucleotides16480 and 16481 are separated by 521 nucleotides mRNA_8111: 16479 - HMMPfam-CTD kinase subunit gamma CTK3-PF12243,HMMPfam-CTD kinase subunit gamma CTK3 C-terminus-PF12350,ProSiteProfiles-CID domain profile.-PS51391, at 439,350 to 440,597 16479 mRNA_8112: 16480 - K14772 UTP20 U3 small nucleolar RNA-associated protein 20, at 440,732 to 449,683 16480 mRNA_8113: 16481 - HMMPfam-Thioesterase-like superfamily-PF13279,SUPERFAMILY--SSF54637, at 450,205 to 451,053 16481

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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440,624 + -1.2
449,891 + -0.6
449,891 + -2.9
449,894 + +0.6
449,916 + +0.2
449,922 - +1.7
450,032 - -0.5
450,035 - -0.7
450,040 - +0.9
450,042 + -2.9
450,049 + -0.6
450,054 - +1.5
450,060 + +0.5
450,064 - -0.5
450,069 + -0.7
450,071 - -1.3
450,075 - -0.1
450,076 + -1.6
450,077 + -0.2
450,089 + +1.5
450,192 - -0.4
450,212 + -0.4
450,217 + -0.0
450,222 + +0.9
450,233 + -0.7
450,370 - 16481 mRNA_8113 0.19 -0.5
450,383 + 16481 mRNA_8113 0.21 +2.0
450,392 - 16481 mRNA_8113 0.22 -0.1
450,394 + 16481 mRNA_8113 0.22 +0.5

Or see this region's nucleotide sequence