Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8149

Experiment: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16516 and 16517 are separated by 547 nucleotides16517 and 16518 are separated by 160 nucleotides mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527,058 to 528,382 16516 mRNA_8149: 16517 - KOG1198 Zinc-binding oxidoreductase, at 528,930 to 530,418 16517 mRNA_8150: 16518 - K11135 PINX1 Pin2-interacting protein X1, at 530,579 to 532,165 16518

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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528,322 - -0.8
528,327 + -0.1
528,481 + -0.3
528,481 + -1.4
528,490 + -0.1
528,498 - +0.9
528,506 - +0.8
528,513 + +0.5
528,549 + -1.6
528,599 - +0.7
528,618 - +0.2
528,625 + +0.1
528,625 + -2.0
528,646 - -1.8
528,651 + +0.7
528,657 - +0.4
528,663 + +0.3
528,671 + -1.1
528,776 + -0.7
528,777 - +0.1
528,779 + +0.4
528,785 + -1.4
528,788 - -0.7
528,817 - -0.3
528,825 + -0.1
528,827 + +0.7
528,827 + -0.2
528,828 - -0.7
528,832 + -0.0
528,841 + -0.4
528,854 + +0.2
528,854 - +0.5
528,854 - +0.4
528,856 + -0.0
528,857 + -1.2
528,864 - +0.1
528,873 + +0.6
528,897 - +1.1
528,898 - +0.8
529,124 - 16517 mRNA_8149 0.13 -0.2
529,137 + 16517 mRNA_8149 0.14 +1.8
530,191 + 16517 mRNA_8149 0.85 +0.5
530,259 - 16517 mRNA_8149 0.89 +1.1
530,364 + +0.8
530,429 + -0.8
530,791 - 16518 mRNA_8150 0.13 -2.2

Or see this region's nucleotide sequence